CDS

Accession Number TCMCG056C16255
gbkey CDS
Protein Id XP_031392917.1
Location complement(join(2877317..2877418,2878145..2878204,2878297..2878383,2878613..2878720,2878812..2878904,2880089..2880172,2880260..2880370,2880447..2880554,2880890..2881000,2881112..2881180,2881262..2881390,2881510..2881758,2881842..2882518,2882763..2882861,2883014..2883139,2883222..2883429,2883816..2883865,2883958..2884114))
Gene LOC116204774
GeneID 116204774
Organism Punica granatum

Protein

Length 875aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA580467
db_source XM_031537057.1
Definition synaptonemal complex protein 1-like isoform X1 [Punica granatum]

EGGNOG-MAPPER Annotation

COG_category S
Description Synaptonemal complex protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K19533        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000793        [VIEW IN EMBL-EBI]
GO:0000794        [VIEW IN EMBL-EBI]
GO:0000795        [VIEW IN EMBL-EBI]
GO:0000802        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007129        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045132        [VIEW IN EMBL-EBI]
GO:0045143        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070192        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0099086        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCAGAAGCTTGGATTTCCGAGCATGAAGAGCTTGAACCAGCTCAAAGCACCGTCTGGATCGTCTTCAGGGACCGGAAAGGCCATCTCCTTCTCTGCGCGCAACACCTCAGATTCACTCGCGATGGGAAGCTTCGCCAATTTGAAGGTCACAGCAGAGAAGCTGGTGAAAGAGCAGGCTTCCGTTAAGACTGATCTCGAGATGGCGAATACGAAATTGAAGAAATCAATGGAGCTTGTCCGTGCACTGGAGGAAAAATTGCAGACTGCTTTAACTGAAAATACTAAACTCAAAGTGAAGCACAAGGAGGACGAGAAGCACTGGAAAGGATTGGAGTCCAAGTTCTCTTCAACGAAAACATTATGTGAGCAGCTTACTGAAACTTTGCAGATCTTAGCTGGACAAGTCCAGGATGCTGAGAAGGATAAGGAGTTCTTTGAAGACAAGCTTTCTGCAAGTTCAGCTGCTTTCGATAGTCTAAATCAGCAAATGAAAGATCTATCCCTTAAGTTGGAGTCTCAAGAGGAGACTATAAGAAAGAGAGATAAGGAACTGGAGGAGCTAAGAATTCAGAAAGAAGAACGGGAAACTGCCTACAGGGATGAACAGAGAAGGACATCCAGTCTCATTGAGGACAAAGATTCCATAATCAGGAAGACTGAAGCATGTTTAGAAGCTAATGGAGTAGCCATGGAGAGATTGAACTCTAAGCTGAAGGAGAAGCATTGTCAATTGACAGTGAAGGAAGATGAAACCCAGCGTTTGATTGCCAGTCAAGATAAATTGGAGAAAGATAAAAATGACCTTGAGTTGATCAAAGATGAGCTTGCAAGCAAACTGGCTTCATCAATCCAGGAAATGAGAACCCTTGAAGGATTTGTGCATCTGTTCTCAGAGCAGTTGGTTGCACTGAATGGTCAAAGCTCGGCTCTCTCAGACAAGTTTGATGAGCTAAATGCAATGCACGACTCTAGGTTGAAGTTGACTGAGGAGAAAATGGATTTCACAGTTAAACTTGCTCAGAGAAAGCATGACCAACTCCAAGACAATCTCTTCTGCACGAGATCTGAGAAAGATGCTTTGCATCTTTTGAATGAGGAGTTAAAAAATAAGGTAAAAGAGCTGGAGAAAGTCCATGAGTCTACCATGGCTCAGCTTTCCAAGGAAAACTGTTTAGCAGGAGAGAAAATCCAAGGATTGGAGGCTGAAGCAAAAGATTTGATTTCTAAGAAGATAGAGGCTGAATTGTTGATTGCTAAATTGGAAGGGGACATTGCCTCCTTATCGGAAGCTGCAAGATCATCTGAAAATATGATGAAAGATTTGTTGGTCAAAATTTCAACACTGGAGGTGGAGAACAAAGAGAGCACCGAAAAGTTCCTGGGAGAACTGCAGAAGAAAACTGAAGACTTAGAAGCTCTTCAAAAGGAGAATGAGAAACATAAGCAAGAGGAAGATTTGTTAAATAAACAAGTCAATGAGCTTCATAATCTTTTACTGGAGAAGGAACAACTTATTTTGCGATATATTGACAAAGAGAGAATTCTCGAAGAGCAAATCTCAGAGAATCAAGGACTGCTCACTGAAGCTGAAAGTAAACTTGCTGAATTGAGAAAGCAATATGATGTTATGCTTGAGAGCAAACAGATTGAGTTAGCAAGACATTTGAAAGAATTGTGTCAGAGGAATGATCAGGCCATCAATGACATTAGGAGAAAGTATGAAGTGGAGAAGCAGGAGATTGTCCATCAAGAAAAAGACAAGGTGGACAAAGTTCTTGCAGAAATGGAAAAGAAGTATGAAAAAGAACTGGCAGAACGCATAGCAGAGTCAAAACAGAACTTGACACGCATGCAGGAGGAGCATGCTGCTCTGGTCAGTCAAATCCAGAAGGAGAACGACAAAAAGGAGGCCATCCTTAAATCTAAACATAGTGAAGAGCTGAAACTTTCTGAACTGCAAGCTGAAAATGAGCTGAGAGAGAGAACCAAGTTGCTCAGGAATGAACATGACGCTCGGATGAAAGCTGTGATGTGTGAGCATGAAGATGAATGTAGGAGGCTCCTGGAGGAGTTAAATCTGCAGAAGACCAAAGAAGAGAGACAGAGGGCATTGCTGCAATTACAGTGGAGAGTAATGGGGGAGCCACAGGAGGACCAAGAAGTCCACTCAAAAAAGGAATACTCAGTCTCTTCAAAAATGAGGAACCCGGTCGGTGGAAGAGGTAGGATGGTCGCCCCAAGGATGGAAAATGAAGAAGATGAGGAGCAGGATTCGCCTCTCCCAGAAGCAGCTCAAACACCAGTATCGAAATTGTTAAAGAAAGTAGAGCATGCTAATCCAGGAAACATAGATGGTGTTCCTAAGCATAGCAAGAAAGTGACACAGCGTGAATATGAAGTTGAGACAACAAATGGAAGAACGGTTGCTAAAAGAAGAAAGACAAAAGGCACAGTTATGTTTGAGGGTCCAAGAAAGAACAAGAAGTTGCCTTCGCAAACAATTGGCACCCCAAAAGACGGAAAGGTTATTCAGCCGGTCAGCCGTCCCCGTGCTTCAAACATAGGTGATCTGTTCTCGGAGGGCTCATTAAATCCATACACAGATGATCCTTATGCATTTGACTAA
Protein:  
MQKLGFPSMKSLNQLKAPSGSSSGTGKAISFSARNTSDSLAMGSFANLKVTAEKLVKEQASVKTDLEMANTKLKKSMELVRALEEKLQTALTENTKLKVKHKEDEKHWKGLESKFSSTKTLCEQLTETLQILAGQVQDAEKDKEFFEDKLSASSAAFDSLNQQMKDLSLKLESQEETIRKRDKELEELRIQKEERETAYRDEQRRTSSLIEDKDSIIRKTEACLEANGVAMERLNSKLKEKHCQLTVKEDETQRLIASQDKLEKDKNDLELIKDELASKLASSIQEMRTLEGFVHLFSEQLVALNGQSSALSDKFDELNAMHDSRLKLTEEKMDFTVKLAQRKHDQLQDNLFCTRSEKDALHLLNEELKNKVKELEKVHESTMAQLSKENCLAGEKIQGLEAEAKDLISKKIEAELLIAKLEGDIASLSEAARSSENMMKDLLVKISTLEVENKESTEKFLGELQKKTEDLEALQKENEKHKQEEDLLNKQVNELHNLLLEKEQLILRYIDKERILEEQISENQGLLTEAESKLAELRKQYDVMLESKQIELARHLKELCQRNDQAINDIRRKYEVEKQEIVHQEKDKVDKVLAEMEKKYEKELAERIAESKQNLTRMQEEHAALVSQIQKENDKKEAILKSKHSEELKLSELQAENELRERTKLLRNEHDARMKAVMCEHEDECRRLLEELNLQKTKEERQRALLQLQWRVMGEPQEDQEVHSKKEYSVSSKMRNPVGGRGRMVAPRMENEEDEEQDSPLPEAAQTPVSKLLKKVEHANPGNIDGVPKHSKKVTQREYEVETTNGRTVAKRRKTKGTVMFEGPRKNKKLPSQTIGTPKDGKVIQPVSRPRASNIGDLFSEGSLNPYTDDPYAFD